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One Codex

One Codex Samples API

The Samples API from One Codex — 11 operation(s) for samples.

Documentation Provider Profile APIs.io OpenAPI GitHub

One Codex Samples API is one of 25 APIs that One Codex publishes on the APIs.io network, described by a machine-readable OpenAPI specification.

Tagged areas include Samples. The published artifact set on APIs.io includes an OpenAPI specification and authentication docs.

This API exposes 13 operations across 11 paths, and defines 2 schemas. It is described by OpenAPI 3.1.0, at version v1.

Requests are made against a single base URL, https://app.onecodex.com.

13 operations 11 paths 2 schemas 1 DELETE4 GET1 PATCH7 POST

Metadata

The identity and technical contract details declared by the specification.

Specification
OpenAPI 3.1.0
API Version
v1
Base URL
https://app.onecodex.com/api/v1/
Authentication
API Key
Resource Areas
1

Authentication & Security 1

One Codex Samples API declares 1 security scheme for authenticating requests. An API key is passed in the header as X-API-Key (apiKeyAuth). By default, every request must be authenticated.

Paths & Operations 13

Across 11 paths, the API surfaces 13 operations — 1 DELETE, 4 GET, 1 PATCH, 7 POST. Each is listed below with its method, path, parameters, and response codes.

Samples 13
GET
/api/v1/samples
GET samples instances
get_samples_instances 4 params → 200
POST
/api/v1/samples/cancel_upload
POST samples instancescancelupload
post_samples_instances_cancel_upload body → 200
POST
/api/v1/samples/confirm_upload
POST samples instancesconfirmupload
post_samples_instances_confirm_upload body → 200
POST
/api/v1/samples/import
POST samples instancesimport
post_samples_instances_import body → 200
POST
/api/v1/samples/init_multipart_upload
Start a multipart upload directly to S3.
post_samples_instances_init_multipart_upload body → 200
POST
/api/v1/samples/init_upload
POST samples instancesinitupload
post_samples_instances_init_upload body → 200
GET
/api/v1/samples/organization
GET samples instancesorganization
get_samples_instances_organization 4 params → 200
POST
/api/v1/samples/preupload
POST samples instancespreupload
post_samples_instances_preupload body → 200
GET
/api/v1/samples/public
GET samples instancespublic
get_samples_instances_public 4 params → 200
DELETE
/api/v1/samples/{id}
DELETE samples
delete_samples_self 1 param → 204
GET
/api/v1/samples/{id}
GET samples
get_samples_self 1 param → 200
PATCH
/api/v1/samples/{id}
PATCH samples
patch_samples_self 1 param body → 200
POST
/api/v1/samples/{id}/download_uri
POST samples downloaduri
post_samples_download_uri 1 param → 200

Schemas 2

The contract defines 2 schemas that model the data the API accepts and returns. The most detailed are samples (13 properties), projects (8 properties). Each schema is shown below with its type and property counts.

projects
object
8 properties 4 required
samples
object
13 properties 7 required

Specification

The full machine-readable OpenAPI contract behind this narrative.

Source

one-codex-samples-api-openapi.yml Raw ↑

Other APIs One Codex publishes across the network.

One Codex Account API
AE Profile APIs.io
One Codex Alignments API
AE Profile APIs.io
One Codex Analyses API
AE Profile APIs.io
One Codex Annotation Sets API
AE Profile APIs.io
One Codex Assemblies API
AE Profile APIs.io
One Codex Assets API
AE Profile APIs.io
One Codex Classifications API
AE Profile APIs.io
One Codex Controls API
AE Profile APIs.io
One Codex Documents API
AE Profile APIs.io
One Codex Events API
AE Profile APIs.io
One Codex Functional Profiles API
AE Profile APIs.io
One Codex Genomes API
AE Profile APIs.io
#Samples
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API Details
ID
one-codex:one-codex-samples-api
Base URL
https://app.onecodex.com/api/v1/
Docs
https://developer.onecodex.com/
Provider
One Codex
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