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One Codex

One Codex Alignments API

The Alignments API from One Codex — 9 operation(s) for alignments.

Documentation Provider Profile APIs.io OpenAPI GitHub

One Codex Alignments API is one of 25 APIs that One Codex publishes on the APIs.io network, described by a machine-readable OpenAPI specification.

Tagged areas include Alignments. The published artifact set on APIs.io includes an OpenAPI specification and authentication docs.

This API exposes 10 operations across 9 paths, and defines 1 schema. It is described by OpenAPI 3.1.0, at version v1.

Requests are made against a single base URL, https://app.onecodex.com.

10 operations 9 paths 1 schemas 1 DELETE7 GET2 POST

Metadata

The identity and technical contract details declared by the specification.

Specification
OpenAPI 3.1.0
API Version
v1
Base URL
https://app.onecodex.com/api/v1/
Authentication
API Key
Resource Areas
1

Authentication & Security 1

One Codex Alignments API declares 1 security scheme for authenticating requests. An API key is passed in the header as X-API-Key (apiKeyAuth). By default, every request must be authenticated.

Paths & Operations 10

Across 9 paths, the API surfaces 10 operations — 1 DELETE, 7 GET, 2 POST. Each is listed below with its method, path, parameters, and response codes.

Alignments 10
GET
/api/v1/alignments
GET alignments instances
get_alignments_instances 4 params → 200
GET
/api/v1/alignments/public
GET alignments instancespublic
get_alignments_instances_public 4 params → 200
GET
/api/v1/alignments/{id}
GET alignments
get_alignments_self 1 param → 200
POST
/api/v1/alignments/{id}/cancel
POST alignments cancel
post_alignments_cancel 1 param → 200
GET
/api/v1/alignments/{id}/file_details
GET alignments filedetails
get_alignments_file_details 1 param → 200
DELETE
/api/v1/alignments/{id}/files
DELETE alignments files
delete_alignments_files 1 param → 204
GET
/api/v1/alignments/{id}/files
GET alignments files
get_alignments_files 1 param → 200
GET
/api/v1/alignments/{id}/logs
GET alignments logs
get_alignments_logs 2 params → 200
POST
/api/v1/alignments/{id}/rerun
POST alignments rerun
post_alignments_rerun 1 param → 200
GET
/api/v1/alignments/{id}/results
GET alignments results
get_alignments_results 1 param → 200

Schemas 1

The contract defines 1 schema that model the data the API accepts and returns. The most detailed is alignments (9 properties). Each schema is shown below with its type and property counts.

alignments
object
9 properties 4 required

Specification

The full machine-readable OpenAPI contract behind this narrative.

Source

one-codex-alignments-api-openapi.yml Raw ↑

Other APIs One Codex publishes across the network.

One Codex Account API
AE Profile APIs.io
One Codex Analyses API
AE Profile APIs.io
One Codex Annotation Sets API
AE Profile APIs.io
One Codex Assemblies API
AE Profile APIs.io
One Codex Assets API
AE Profile APIs.io
One Codex Classifications API
AE Profile APIs.io
One Codex Controls API
AE Profile APIs.io
One Codex Documents API
AE Profile APIs.io
One Codex Events API
AE Profile APIs.io
One Codex Functional Profiles API
AE Profile APIs.io
One Codex Genomes API
AE Profile APIs.io
One Codex Jobs API
AE Profile APIs.io
#Alignments
← Back to O APIs
API Details
ID
one-codex:one-codex-alignments-api
Base URL
https://app.onecodex.com/api/v1/
Docs
https://developer.onecodex.com/
Provider
One Codex
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