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Emory University

Emory University Slicer Cli Web API

slicer_cli_web resource

Documentation Provider Profile APIs.io OpenAPI GitHub

Emory University Slicer Cli Web API is one of 31 APIs that Emory University publishes on the APIs.io network, described by a machine-readable OpenAPI specification.

This API exposes 2 JSON Schema definitions.

The published artifact set on APIs.io includes an OpenAPI specification and 2 JSON Schemas.

This API exposes 48 operations across 45 paths. It is described by OpenAPI 3.2.0, at version 3.2.14.

Requests are made against a single base URL, https://computablebrain.emory.edu/api/v1.

48 operations 45 paths 0 schemas 2 DELETE5 GET40 POST1 PUT

Metadata

The identity and technical contract details declared by the specification.

Specification
OpenAPI 3.2.0
API Version
3.2.14
Base URL
https://computablebrain.emory.edu/api/v1
Authentication
API Key
License
Apache-2.0
Resource Areas
1

Authentication & Security 1

Emory University Slicer Cli Web API declares 1 security scheme for authenticating requests. An API key is passed in the header as Girder-Token (Girder-Token).

Paths & Operations 48

Across 45 paths, the API surfaces 48 operations — 2 DELETE, 5 GET, 40 POST, 1 PUT. Each is listed below with its method, path, parameters, and response codes.

slicer_cli_web 48

slicercliweb resource

GET
/slicer_cli_web/cli
List CLIs
slicer_cli_web_getItems_cli 1 param → 200403
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566ecf/rerun
Rerun Color Deconvolution
slicer_cli_web_rerunHandler_post_cli_5f3d811c50cd9fe632566ecf_rerun 19 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566ecf/run
Color Deconvolution
slicer_cli_web_cliHandler_post_cli_5f3d811c50cd9fe632566ecf_run 18 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566ed1/rerun
Rerun Adaptive Color Deconvolution
slicer_cli_web_rerunHandler_post_cli_5f3d811c50cd9fe632566ed1_rerun 18 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566ed1/run
Adaptive Color Deconvolution
slicer_cli_web_cliHandler_post_cli_5f3d811c50cd9fe632566ed1_run 17 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566ed3/rerun
Rerun Detects Nuclei
slicer_cli_web_rerunHandler_post_cli_5f3d811c50cd9fe632566ed3_rerun 32 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566ed3/run
Detects Nuclei
slicer_cli_web_cliHandler_post_cli_5f3d811c50cd9fe632566ed3_run 31 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566ed5/rerun
Rerun Computes Nuclei Features
slicer_cli_web_rerunHandler_post_cli_5f3d811c50cd9fe632566ed5_rerun 42 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566ed5/run
Computes Nuclei Features
slicer_cli_web_cliHandler_post_cli_5f3d811c50cd9fe632566ed5_run 41 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566ed7/rerun
Rerun Classify Nuclei
slicer_cli_web_rerunHandler_post_cli_5f3d811c50cd9fe632566ed7_rerun 13 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566ed7/run
Classify Nuclei
slicer_cli_web_cliHandler_post_cli_5f3d811c50cd9fe632566ed7_run 12 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566ed9/rerun
Rerun Compute Background Intensity
slicer_cli_web_rerunHandler_post_cli_5f3d811c50cd9fe632566ed9_rerun 12 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566ed9/run
Compute Background Intensity
slicer_cli_web_cliHandler_post_cli_5f3d811c50cd9fe632566ed9_run 11 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566edb/rerun
Rerun Separate Stains (PCA-based Macenko method)
slicer_cli_web_rerunHandler_post_cli_5f3d811c50cd9fe632566edb_rerun 16 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566edb/run
Separate Stains (PCA-based Macenko method)
slicer_cli_web_cliHandler_post_cli_5f3d811c50cd9fe632566edb_run 15 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566edd/rerun
Rerun Positive Pixel Count
slicer_cli_web_rerunHandler_post_cli_5f3d811c50cd9fe632566edd_rerun 21 params → 200400
POST
/slicer_cli_web/cli/5f3d811c50cd9fe632566edd/run
Positive Pixel Count
slicer_cli_web_cliHandler_post_cli_5f3d811c50cd9fe632566edd_run 20 params → 200400
POST
/slicer_cli_web/cli/6226c700ea96453654b57afd/rerun
Rerun Superpixel Pixelmap
slicer_cli_web_rerunHandler_post_cli_6226c700ea96453654b57afd_rerun 20 params → 200400
POST
/slicer_cli_web/cli/6226c700ea96453654b57afd/run
Superpixel Pixelmap
slicer_cli_web_cliHandler_post_cli_6226c700ea96453654b57afd_run 19 params → 200400
POST
/slicer_cli_web/cli/63a0a1fd9a9ebb3f668acd34/rerun
Rerun Simple Get Region
slicer_cli_web_rerunHandler_post_cli_63a0a1fd9a9ebb3f668acd34_rerun 8 params → 200400
POST
/slicer_cli_web/cli/63a0a1fd9a9ebb3f668acd34/run
Simple Get Region
slicer_cli_web_cliHandler_post_cli_63a0a1fd9a9ebb3f668acd34_run 7 params → 200400
DELETE
/slicer_cli_web/cli/{id}
Get a specific CLI
slicer_cli_web_deleteItem_delete_cli_id 1 param → 200403
GET
/slicer_cli_web/cli/{id}
Get a specific CLI
slicer_cli_web_getItem_cli_id 1 param → 200403
GET
/slicer_cli_web/cli/{id}/xml
Get a specific CLI
slicer_cli_web_getItemXML_cli_id_xml 1 param → 200403
DELETE
/slicer_cli_web/docker_image
Remove a docker image
slicer_cli_web_deleteImage_delete_docker_image 2 params → 200403500
GET
/slicer_cli_web/docker_image
List docker images and their CLIs
slicer_cli_web_getDockerImages_docker_image → 200400
PUT
/slicer_cli_web/docker_image
Add one or a list of images
slicer_cli_web_setImages_put_docker_image 3 params → 200403500
POST
/slicer_cli_web/dsarchive_histomicstk_latest/BackgroundIntensity/rerun
Rerun Compute Background Intensity
slicer_cli_web_rerunHandler_post_dsarchive_histomicstk_latest_BackgroundIntensity_rerun 12 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/BackgroundIntensity/run
Compute Background Intensity
slicer_cli_web_cliHandler_post_dsarchive_histomicstk_latest_BackgroundIntensity_run 11 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/ColorDeconvolution/rerun
Rerun Color Deconvolution
slicer_cli_web_rerunHandler_post_dsarchive_histomicstk_latest_ColorDeconvolution_rerun 19 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/ColorDeconvolution/run
Color Deconvolution
slicer_cli_web_cliHandler_post_dsarchive_histomicstk_latest_ColorDeconvolution_run 18 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/ComputeNucleiFeatures/rerun
Rerun Computes Nuclei Features
slicer_cli_web_rerunHandler_post_dsarchive_histomicstk_latest_ComputeNucleiFeatures_rerun 42 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/ComputeNucleiFeatures/run
Computes Nuclei Features
slicer_cli_web_cliHandler_post_dsarchive_histomicstk_latest_ComputeNucleiFeatures_run 41 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/NucleiClassification/rerun
Rerun Classify Nuclei
slicer_cli_web_rerunHandler_post_dsarchive_histomicstk_latest_NucleiClassification_rerun 13 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/NucleiClassification/run
Classify Nuclei
slicer_cli_web_cliHandler_post_dsarchive_histomicstk_latest_NucleiClassification_run 12 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/NucleiDetection/rerun
Rerun Detects Nuclei
slicer_cli_web_rerunHandler_post_dsarchive_histomicstk_latest_NucleiDetection_rerun 32 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/NucleiDetection/run
Detects Nuclei
slicer_cli_web_cliHandler_post_dsarchive_histomicstk_latest_NucleiDetection_run 31 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/PositivePixelCount/rerun
Rerun Positive Pixel Count
slicer_cli_web_rerunHandler_post_dsarchive_histomicstk_latest_PositivePixelCount_rerun 21 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/PositivePixelCount/run
Positive Pixel Count
slicer_cli_web_cliHandler_post_dsarchive_histomicstk_latest_PositivePixelCount_run 20 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/SeparateStainsMacenkoPCA/rerun
Rerun Separate Stains (PCA-based Macenko method)
slicer_cli_web_rerunHandler_post_dsarchive_histomicstk_latest_SeparateStainsMacenkoPCA_rerun 16 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/SeparateStainsMacenkoPCA/run
Separate Stains (PCA-based Macenko method)
slicer_cli_web_cliHandler_post_dsarchive_histomicstk_latest_SeparateStainsMacenkoPCA_run 15 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/SeparateStainsXuSnmf/rerun
Rerun Adaptive Color Deconvolution
slicer_cli_web_rerunHandler_post_dsarchive_histomicstk_latest_SeparateStainsXuSnmf_rerun 18 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/SeparateStainsXuSnmf/run
Adaptive Color Deconvolution
slicer_cli_web_cliHandler_post_dsarchive_histomicstk_latest_SeparateStainsXuSnmf_run 17 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/SuperpixelSegmentation/rerun
Rerun Superpixel Pixelmap
slicer_cli_web_rerunHandler_post_dsarchive_histomicstk_latest_SuperpixelSegmentation_rerun 20 params → 200400
POST
/slicer_cli_web/dsarchive_histomicstk_latest/SuperpixelSegmentation/run
Superpixel Pixelmap
slicer_cli_web_cliHandler_post_dsarchive_histomicstk_latest_SuperpixelSegmentation_run 19 params → 200400
POST
/slicer_cli_web/jvizcar_braak-study_cli-tasks/hp_tau_detection/rerun
Rerun Simple Get Region
slicer_cli_web_rerunHandler_post_jvizcar_braak-study_cli-tasks_hp_tau_detection_rerun 8 params → 200400
POST
/slicer_cli_web/jvizcar_braak-study_cli-tasks/hp_tau_detection/run
Simple Get Region
slicer_cli_web_cliHandler_post_jvizcar_braak-study_cli-tasks_hp_tau_detection_run 7 params → 200400
GET
/slicer_cli_web/path_match
Get the most recently updated resource that has a name and path that matches a…
slicer_cli_web_getMatchingResource_path_match 6 params → 200400

Specification

The full machine-readable OpenAPI contract behind this narrative.

Source

emory-slicer-cli-web-api-openapi.yml Raw ↑

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← Back to E APIs
API Details
ID
emory:emory-slicer-cli-web-api
Base URL
https://computablebrain.emory.edu/api/v1
Docs
https://computablebrain.emory.edu/api/v1
Provider
Emory University
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