Benchling Nucleotide Alignment API
Represents a multiple sequence alignment of nucleotide sequences (DNA or RNA). Nucleotidealignments are used to compare sequence reads against a reference template for verification(see AlignmentType TEMPLATE) or to align multiple sequences for consensus building (seeAlignmentType CONSENSUS). Each alignment contains a referenceSequence (the template orconsensus) and a collection of AlignedNucleotideSequence entries representing the individual sequencesbeing compared. Alignments are commonly used in Sanger sequencing verification workflowsto confirm that a cloned construct matches the expected design.
Benchling Nucleotide Alignment API is one of 203 APIs that Benchling publishes on the APIs.io network, described by a machine-readable OpenAPI specification.
Tagged areas include NucleotideAlignment. The published artifact set on APIs.io includes an OpenAPI specification, API documentation, an API reference, authentication docs, rate-limit docs, and a changelog.
This API exposes 9 operations across 8 paths, and defines 16 schemas. It is described by OpenAPI 3.2.0, at version 2.0.0.
Requests are made against a single base URL, /api/v3.
Metadata
The identity and technical contract details declared by the specification.
Authentication & Security 3
Benchling Nucleotide Alignment API declares
3 security schemes
for authenticating requests.
It accepts HTTP basic authentication (basicApiKeyAuth).
It accepts HTTP basic authentication (basicClientIdSecretAuth).
It supports OAuth 2.0 (oAuth) using the clientCredentials flow.
By default, every request must be authenticated.
basicApiKeyAuth— Use issued API key for standard access to the APIbasicClientIdSecretAuth— Auth used as part of client credentials OAuth flow prior to receiving a bearer token.oAuth— OAuth2 Client Credentials flow intended for service access
Paths & Operations 9
Across 8 paths, the API surfaces 9 operations — 1 DELETE, 5 GET, 3 POST. Each is listed below with its method, path, parameters, and response codes.
Represents a multiple sequence alignment of nucleotide sequences (DNA or RNA). Nucleotide alignments are used to compare sequence reads against a reference template for verificati…
Schemas 16
The contract defines 16 schemas that model the data the API accepts and returns. The most detailed are AlignedNucleotideSequence (9 properties), NucleotideAlignment (8 properties), CreateTemplateAlignmentInput (7 properties), CreateConsensusAlignmentInput (7 properties). Each schema is shown below with its type and property counts.
Specification
The full machine-readable OpenAPI contract behind this narrative.
Source
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Other APIs Benchling publishes across the network.
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