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Benchling Nucleotide Alignments API

A Nucleotide Alignment is a Benchling object representing an alignment of multiple DNA and/or RNA sequences.

Benchling Nucleotide Alignments API is one of 58 APIs that Benchling publishes on the APIs.io network, described by a machine-readable OpenAPI specification.

Tagged areas include Nucleotide Alignments. The published artifact set on APIs.io includes an OpenAPI specification, API documentation, an API reference, authentication docs, a changelog, and a status page.

This API exposes 5 operations across 4 paths, and defines 14 schemas. It is described by OpenAPI 3.0.1, at version 2.0.0.

Requests are made against a single base URL, /api/v2.

5 operations 4 paths 14 schemas 1 DELETE2 GET2 POST

Metadata

The identity and technical contract details declared by the specification.

Specification
OpenAPI 3.0.1
API Version
2.0.0
Base URL
https://{tenant}.benchling.com/api/v2
Authentication
HTTP Basic, HTTP Basic, OAuth 2.0
License
Resource Areas
1

Authentication & Security 3

Benchling Nucleotide Alignments API declares 3 security schemes for authenticating requests. It accepts HTTP basic authentication (basicApiKeyAuth). It accepts HTTP basic authentication (basicClientIdSecretAuth). It supports OAuth 2.0 (oAuth) using the clientCredentials flow. By default, every request must be authenticated.

  • basicApiKeyAuth — Use issued API key for standard access to the API
  • basicClientIdSecretAuth — Auth used as part of client credentials OAuth flow prior to receiving a bearer token.
  • oAuth — OAuth2 Client Credentials flow intended for service access

Paths & Operations 5

Across 4 paths, the API surfaces 5 operations — 1 DELETE, 2 GET, 2 POST. Each is listed below with its method, path, parameters, and response codes.

Nucleotide Alignments 5

A Nucleotide Alignment is a Benchling object representing an alignment of multiple DNA and/or RNA sequences.

GET
/nucleotide-alignments
List Nucleotide Alignments
listNucleotideAlignments 11 params → 200400
DELETE
/nucleotide-alignments/{alignment_id}
Delete a Nucleotide Alignment
deleteNucleotideAlignment 1 param → 200404
GET
/nucleotide-alignments/{alignment_id}
Get a Nucleotide Alignment
getNucleotideAlignment 1 param → 200404
POST
/nucleotide-alignments:create-consensus-alignment
Create a consensus Nucleotide Alignment
createConsensusNucleotideAlignment body → 202
POST
/nucleotide-alignments:create-template-alignment
Create a template Nucleotide Alignment
createTemplateNucleotideAlignment body → 202

Schemas 14

The contract defines 14 schemas that model the data the API accepts and returns. The most detailed are NucleotideAlignmentSummary (7 properties), AlignedNucleotideSequence (7 properties), NucleotideAlignmentBase (5 properties), BaseError (3 properties). Each schema is shown below with its type and property counts.

BadRequestError
object
1 property
NucleotideTemplateAlignmentCreate
EmptyObject
object
NucleotideAlignmentsPaginatedList
object
AlignedNucleotideSequence
object
7 properties
NotFoundError
object
1 property
AsyncTaskLink
object
1 property
BaseError
object
3 properties
NucleotideAlignmentFile
object
2 properties
Pagination
object
1 property
NucleotideAlignmentSummary
object
7 properties
NucleotideAlignment
object
NucleotideAlignmentBase
object
5 properties 2 required
NucleotideConsensusAlignmentCreate

Specification

The full machine-readable OpenAPI contract behind this narrative.

Source

benchling-nucleotide-alignments-api-openapi.yml Raw ↑

Other APIs Benchling publishes across the network.

Benchling AA Sequences API
Benchling Apps API
Benchling Assay Results API
Benchling Assay Runs API
Benchling Audit API
Benchling Authentication API
Benchling Blobs API
Benchling Boxes API
Benchling Codon Usage Tables API
Benchling Connect API
Benchling Containers API
Benchling Custom Entities API
Where this information came from

This is an independent, third-party profile of Benchling Nucleotide Alignments API, published by API Evangelist. We do not operate, host, resell, or support these APIs, and we are not affiliated with or endorsed by the company unless stated above. Everything here is built from publicly available information — the company's own site, developer portal, documentation, public repositories, and the specifications it publishes for public use. Nothing is obtained by breaching a system, defeating an access control, or using credentials.

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