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Benchling DNA Alignments API

A DNA alignment is a Benchling object representing an alignment of multiple DNA sequences. This endpoint is deprecated, please migrate to the existing [Nucleotide Alignments endpoints.](#/Nucleotide%20Alignments)

Benchling DNA Alignments API is one of 58 APIs that Benchling publishes on the APIs.io network, described by a machine-readable OpenAPI specification.

Tagged areas include DNA Alignments. The published artifact set on APIs.io includes an OpenAPI specification, API documentation, an API reference, authentication docs, a changelog, and a status page.

This API exposes 5 operations across 4 paths, and defines 16 schemas. It is described by OpenAPI 3.0.1, at version 2.0.0.

Requests are made against a single base URL, /api/v2.

5 operations 4 paths 16 schemas 1 DELETE2 GET2 POST

Metadata

The identity and technical contract details declared by the specification.

Specification
OpenAPI 3.0.1
API Version
2.0.0
Base URL
https://{tenant}.benchling.com/api/v2
Authentication
HTTP Basic, HTTP Basic, OAuth 2.0
License
Resource Areas
1

Authentication & Security 3

Benchling DNA Alignments API declares 3 security schemes for authenticating requests. It accepts HTTP basic authentication (basicApiKeyAuth). It accepts HTTP basic authentication (basicClientIdSecretAuth). It supports OAuth 2.0 (oAuth) using the clientCredentials flow. By default, every request must be authenticated.

  • basicApiKeyAuth — Use issued API key for standard access to the API
  • basicClientIdSecretAuth — Auth used as part of client credentials OAuth flow prior to receiving a bearer token.
  • oAuth — OAuth2 Client Credentials flow intended for service access

Paths & Operations 5

Across 4 paths, the API surfaces 5 operations — 1 DELETE, 2 GET, 2 POST. Each is listed below with its method, path, parameters, and response codes.

DNA Alignments 5

A DNA alignment is a Benchling object representing an alignment of multiple DNA sequences. This endpoint is deprecated, please migrate to the existing [Nucleotide Alignments endpo…

GET
/dna-alignmentsdeprecated
List DNA Alignments
listDNAAlignments 10 params → 200400
DELETE
/dna-alignments/{dna_alignment_id}deprecated
Delete a DNA Alignment
deleteDNAAlignment 1 param → 200404
GET
/dna-alignments/{dna_alignment_id}deprecated
Get a DNA Alignment
getDNAAlignment 1 param → 200400
POST
/dna-alignments:create-consensus-alignmentdeprecated
Create a consensus DNA alignment
createDnaConsensusAlignment body → 202
POST
/dna-alignments:create-template-alignmentdeprecated
Create a template DNA alignment
createDnaTemplateAlignment body → 202

Schemas 16

The contract defines 16 schemas that model the data the API accepts and returns. The most detailed are AlignedSequence (7 properties), DnaAlignmentSummary (7 properties), MafftOptions (6 properties), ClustaloOptions (5 properties). Each schema is shown below with its type and property counts.

BadRequestError
object
1 property
DnaTemplateAlignmentCreate
EmptyObject
object
NotFoundError
object
1 property
MafftOptions
object
Options to pass to the MAFFT algorithm, only applicable for MAFFT.
6 properties
DnaAlignmentsPaginatedList
object
BaseError
object
3 properties
Pagination
object
1 property
ClustaloOptions
object
Options to pass to the ClustalO algorithm, only applicable for ClustalO.
5 properties
DnaAlignment
object
DnaAlignmentSummary
object
7 properties
AsyncTaskLink
object
1 property
DnaTemplateAlignmentFile
object
2 properties
AlignedSequence
object
7 properties
DnaAlignmentBase
object
5 properties 2 required
DnaConsensusAlignmentCreate

Specification

The full machine-readable OpenAPI contract behind this narrative.

Source

benchling-dna-alignments-api-openapi.yml Raw ↑

Other APIs Benchling publishes across the network.

Benchling AA Sequences API
Benchling Apps API
Benchling Assay Results API
Benchling Assay Runs API
Benchling Audit API
Benchling Authentication API
Benchling Blobs API
Benchling Boxes API
Benchling Codon Usage Tables API
Benchling Connect API
Benchling Containers API
Benchling Custom Entities API
Where this information came from

This is an independent, third-party profile of Benchling DNA Alignments API, published by API Evangelist. We do not operate, host, resell, or support these APIs, and we are not affiliated with or endorsed by the company unless stated above. Everything here is built from publicly available information — the company's own site, developer portal, documentation, public repositories, and the specifications it publishes for public use. Nothing is obtained by breaching a system, defeating an access control, or using credentials.

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